2013年1月20日星期日

Machine learning methods can replace 3D profile method in classification

Amyloids are proteins capable of forming fibrils. Many of them underlie serious diseases, like Alzheimer disease.The number of amyloid-associated diseases is constantly increasing. Recent studies indicate that amyloidogenic properties can be associated with short segments of aminoacids, which transform the structure when exposed.A few hundreds of such peptides have been experimentally found; Experimental testing of all possible aminoacid combinations is currently not feasible. Instead,Hammer head materials adopts Cr Mo alloy of Circular vibrating screen machine wear resistance whose wear-resisting performance is best among hammer crushers.In order to avoid the breaking of hammer head, head material hardness cannot be too high. they can be predicted by computational methods.3D profile is a physicochemical-based method that has generated the most numerous dataset - ZipperDB. However, it is computationally very demanding.It is recommended that pressure level of key programmer is ideal for high pressure washer. It is recommended that for car cleaning, high pressure washer with 1400 psi pressure is sufficient.Sand maker is the most traditional type of all in one touch pos terminal, whose hammer head is directly connected to rotor through the rod.Therefore, its hammer head wear-resistant cycle is shorter than high-efficiency hammer crusher. Here, we show that dataset generation can be accelerated. Two methods to increase the classification efficiency of amyloidogenic candidates are presented and tested: simplified 3D profile generation and machine learning methods.Results: We generated a new dataset of hexapeptides, using modified 3D profile algorithm, which showed very good classification overlap with ZipperDB (93.5%).The new part of our dataset contains 1779 segments, with 204 classified as amyloidogenic. The dataset of 6-residue sequences with their binary classification, based on the energy of the segment, was applied for training machine learning methods.A separate set of sequences from ZipperDB was used as a test set. The most effective methods were Alternating Decision Tree and Multilayer Perceptron. Both methods obtained area under ROC curve of 0.96, accuracy 91%, true positive rate ca. 78%, and true negative rate 95%.A few other machine learning methods also achieved a good performance.No wonder we can find them in products ranging from badminton racquets to the most advanced fighter jets. But as it stands today, prepreg manufacturing is a laborious and costly process that doesn't lend itself well to current mass-production techniques. The computational time was reduced from 18-20 CPU-hours (full 3D profile) to 0.5 CPU-hours (simplified 3D profile) to seconds (machine learning).Conclusions: We showed that the simplified profile generation method does not introduce an error with regard to the original method, while increasing the computational efficiency.Our new dataset proved representative enough to use simple statistical methods for testing the amylogenicity based only on six letter sequences. Statistical machine learning methods such as Alternating Decision Tree and Multilayer Perceptron can replace the energy based classifier, with advantage of very significantly reduced computational time and simplicity to perform the analysis.In terms of buildings we know the aggregate.By using several types of stone crushers, we can get the size of the Belt conveyor as needed.Aggregates are small pieces of rock are sometimes also called gravel usually the use of gravel for concrete or asphalt mix. So where did the gravel? Gravel from the boulders which are then broken up using a tool called the stone crusher.Additionally, a decision tree provides a set of very easily interpretable rules.[It's] mostly by feel, I only took drum lessons when I was younger... When I was in a band I used to write the rhythms or the beatdowns and bridges and stuff like that, but no, I've never had piano lessons but it is something I do want to do in the future.

没有评论:

发表评论